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Article Dans Une Revue F1000Research Année : 2017

The future of metabolomics in ELIXIR

1 Dutch Techcentre for Life Sciences [Utrecht]
2 Netherlands Metabolomics Centre
3 Department of Mathematics and Computer Science
4 UA - University of Antwerp
5 ELIXIR-FR - French Institute of Bioinformatics
6 Department of Biochemistry and Molecular Biomedicine
7 University of Barcelona
8 Birmingham Metabolomics Training Centre
9 University of Birmingham
10 Department of Surgery and Cancer
11 Imperial College London
12 UNH - Unité de Nutrition Humaine
13 MetaboHUB
14 Oxford e-Research Centre
15 University of Oxford
16 LACDR - Leiden Academic Centre for Drug Research
17 Universiteit Leiden = Leiden University
18 EMBL-EBI - European Bioinformatics Institute [Hinxton]
19 Centro Nacional de Investigaciones Cardiovasculares
20 CIBERES - Centro de Investigación Biomédica en Red de Enfermedades Respiratorias
21 ELIXIR Hub [Cambridge]
22 ToxAlim-MeX - Métabolisme et Xénobiotiques
23 Forth ICE-HT, Institute of Chemical Engineering Sciences
24 Max Planck Institute for Developmental Biology
25 Department of Computer Science
26 Center for Bioinformatics
27 University of Tübingen
28 The Centre of Excellence in Neural and Behavioural Sciences
29 Tallinn University
30 School of Natural Sciences and Health
31 University of Miyasaki - Department of Medical Sciences
32 ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science
33 UPMC - Université Pierre et Marie Curie - Paris 6
34 CNRS - Centre National de la Recherche Scientifique
35 ICB - Instituto de Ciencias Biologicas [Minas Gerais]
36 University of Patras
37 Department of Stress and Developmental Biology
38 BSRC "Alexander Fleming"
39 Magnetic Resonance Center/Interuniversity Consortium of Magnetic Resonance Metalloproteins
40 UniFI - Università degli Studi di Firenze = University of Florence
41 LCSB - Luxembourg Centre For Systems Biomedicine
42 Uni.lu - Université du Luxembourg
43 Department of Pharmaceutical Biosciences
44 LS2D (CEA, LIST) - Laboratoire Sciences des Données et de la Décision (CEA, LIST)
45 Department of Bioinformatics
46 Maastricht University [Maastricht]
47 NUTRIM
48 Data-Intensive Computing
49 Friedrich-Schiller-Universität = Friedrich Schiller University Jena [Jena, Germany]
Franck Giacomoni
Fabien Jourdan

Résumé

Metabolomics, the youngest of the major omics technologies, is supported by an active community of researchers and infrastructure developers across Europe. To coordinate and focus efforts around infrastructure building for metabolomics within Europe, a workshop on the "Future of metabolomics in ELIXIR" was organised at Frankfurt Airport in Germany. This one-day strategic workshop involved representatives of ELIXIR Nodes, members of the PhenoMeNal consortium developing an e-infrastructure that supports workflow-based metabolomics analysis pipelines, and experts from the international metabolomics community. The workshop established metabolite identification as the critical area, where a maximal impact of computational metabolomics and data management on other fields could be achieved. In particular, the existing four ELIXIR Use Cases, where the metabolomics community - both industry and academia - would benefit most, and which could be exhaustively mapped onto the current five ELIXIR Platforms were discussed. This opinion article is a call for support for a new ELIXIR metabolomics Use Case, which aligns with and complements the existing and planned ELIXIR Platforms and Use Cases
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Dates et versions

hal-01630635 , version 1 (23-03-2020)

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M. van Rijswijk, C. Beirnaert, C. Caron, M. Cascante, V. Dominguez, et al.. The future of metabolomics in ELIXIR. F1000Research, 2017, 6 (Version 2), ⟨10.12688/f1000research.12342.2⟩. ⟨hal-01630635⟩
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