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  Raphaël Méheust, Andrew Watson, Francois-Joseph Lapointe, R. Thane Papke, Philippe Lopez, et al.. Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution. Genome Biology, BioMed Central, 2018, 19, pp.75. ⟨10.1186/s13059-018-1454-9⟩. ⟨hal-01830047⟩
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  Raphaël Méheust, Debashish Bhattacharya, Jananan Pathmanathan, James Mcinerney, Philippe Lopez, et al.. Formation of chimeric genes with essential functions at the origin of eukaryotes. BMC Biology, BioMed Central, 2018, 16, pp.30. ⟨10.1186/s12915-018-0500-0⟩. ⟨hal-01761411⟩
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  Guillaume Bernard, Jananan Pathmanathan, Romain Lannes, Philippe Lopez, Eric Bapteste. Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2018, 10 (3), pp.707 - 715. ⟨10.1093/gbe/evy031⟩. ⟨hal-01799304⟩
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  Eduardo Corel, Raphaël Méheust, Andrew K Watson, James Mcinerney, Philippe Lopez, et al.. Bipartite Network Analysis of Gene Sharings in the Microbial World. Molecular Biology and Evolution, Oxford University Press (OUP), 2018, 35 (4), pp.899-913. ⟨10.1093/molbev/msy001⟩. ⟨hal-01798030⟩
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  Johann-Mattis List, Jananan Sylvestre Pathmanathan, Nathan W. Hill, Eric Bapteste, Philippe Lopez. Vowel purity and rhyme evidence in Old Chinese reconstruction. Lingua Sinica, 2017, 3 (1), pp.5. ⟨10.1186/s40655-017-0021-8⟩. ⟨hal-01555483⟩
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  Richard G Dorrell, Gillian Gile, Giselle Mccallum, Raphaël Méheust, Eric P Bapteste, et al.. Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome. eLife, eLife Sciences Publication, 2017, 6, pp.e23717. ⟨10.7554/eLife.23717⟩. ⟨hal-01526828⟩
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  Etienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, et al.. BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts. PLoS ONE, Public Library of Science, 2016, 11 (8), pp.e0161474. ⟨10.1371/journal.pone.0161474⟩. ⟨hal-01361753⟩
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  Eduardo Corel, Philippe Lopez, Raphaël Méheust, Eric Bapteste. Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution. Trends in Microbiology, Elsevier, 2016, 24 (3), pp.224-237. ⟨10.1016/j.tim.2015.12.003⟩. ⟨hal-01300043⟩
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  Johann-Mattis List, Jananan Sylvestre Pathmanathan, Philippe Lopez, Eric Bapteste. Unity and disunity in evolutionary sciences: process-based analogies open common research avenues for biology and linguistics. Biology Direct, BioMed Central, 2016, 11, pp.39. ⟨10.1186/s13062-016-0145-2⟩. ⟨hal-01378396⟩
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  Fabini Orata, Paul Kirchberger, Raphaël Méheust, E. Jed Barlow, Cheryl L. Tarr, et al.. The Dynamics of Genetic Interactions Between Vibrio metoecus and Vibrio cholerae, Two Close Relatives Co-Occurring in the Environment . Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (10), pp.2941-2954. ⟨10.1093/gbe/evv193⟩. ⟨hal-01264332⟩

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