A Step Toward Barcoding Life: A Model-Based, Decision-Theoretic Method to Assign Genes to Preexisting Species Groups, Systematic Biology, vol.56, issue.1, pp.44-56, 2007. ,
DOI : 10.1080/10635150601167005
genoBASE pylori: A genotype search tool and database of the human gastric pathogen Helicobacter pylori, Infection, Genetics and Evolution, vol.7, issue.4, pp.463-468, 2007. ,
DOI : 10.1016/j.meegid.2007.01.006
DNA-based taxonomy for associating adults and larvae in multi-species assemblages of chafers (Coleoptera: Scarabaeidae), Molecular Phylogenetics and Evolution, vol.44, issue.1, pp.436-449, 2007. ,
DOI : 10.1016/j.ympev.2007.02.024
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997. ,
DOI : 10.1093/nar/25.17.3389
oxidase I barcodes in the identification of closely related delphinid cetacean species, Marine and Freshwater Research, vol.58, issue.6, pp.505-510, 2007. ,
DOI : 10.1071/MF07050
epiPATH: an information system for the storage and management of molecular epidemiology data from infectious pathogens, BMC Infectious Diseases, vol.13, issue.7, pp.32-42, 1471. ,
DOI : 10.1145/259963.260531
Revision of the Alpheus nuttingi (Schmitt) species complex (Crustacea: Decapoda: Alpheidae), with description of a new species from the tropical eastern Pacific, Zootaxa, vol.1577, pp.41-60, 2007. ,
DNA barcodes for biosecurity: invasive species identification, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.34, issue.10, pp.1813-1823, 2005. ,
DOI : 10.1016/j.ijpara.2004.06.003
Species Concepts, Species Boundaries and Species Identification: A View from the Tropics, Systematic Biology, vol.54, issue.4, pp.689-693, 2007. ,
DOI : 10.1080/10635150590950308
Biological identifications of mayflies (Ephemeroptera) using DNA barcodes, Journal of the North American Benthological Society, vol.24, issue.3, pp.508-524, 2005. ,
DOI : 10.1899/04-142.1
DNA barcodes for insect pest identification: a test case with tussock moths (Lepidoptera: Lymantriidae), Canadian Journal of Forest Research, vol.36, issue.2, pp.337-350, 2006. ,
DOI : 10.1139/x05-276
Intraspecific Genetic Variation in Paramecium Revealed by Mitochondrial Cytochrome c Oxidase I Sequences, The Journal of Eukaryotic Microbiology, vol.46, issue.1, pp.20-25, 2006. ,
DOI : 10.1266/jjg.69.307
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals, Science, vol.312, issue.5773, pp.570-572, 2006. ,
DOI : 10.1126/science.1122033
URL : https://hal.archives-ouvertes.fr/halsde-00339540
Yeasts Isolated from Neotropical Wood-Boring Beetles in SE Peru, Biotropica, vol.63, issue.4, pp.530-538, 2007. ,
DOI : 10.1046/j.1570-7458.2003.00034.x
DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you, Trends in Parasitology, vol.19, issue.12, pp.545-546, 2003. ,
DOI : 10.1016/j.pt.2003.09.015
Defining operational taxonomic units using DNA barcode data, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.54, issue.1, pp.1935-1943, 2005. ,
DOI : 10.1080/10635150590906028
Will DNA barcoding advance efforts to conserve biodiversity more efficiently than traditional taxonomic methods?, Front. Ecol. Environ, vol.5, pp.269-270, 2006. ,
Feeding ecology of Xenoturbella bocki (phylum Xenoturbellida) revealed by genetic barcoding, Molecular Ecology Resources, vol.3, issue.1, pp.18-22, 2008. ,
DOI : 10.1641/0006-3568(2003)053[0796:TDATBC]2.0.CO;2
Classification and Regression Trees, 1984. ,
DNA barcodes for species identification of euphausiids (Euphausiacea, Crustacea), DNA barcodes for species identification of euphausiids, pp.483-493, 2007. ,
DOI : 10.1093/plankt/fbm031
A molecular systematic evaluation of the squid genus Illex (Cephalopoda: Ommastrephidae) in the North Atlantic Ocean and Mediterranean Sea, Molecular Phylogenetics and Evolution, vol.41, issue.2, pp.496-502, 2006. ,
DOI : 10.1016/j.ympev.2006.05.011
DNA identification and morphological description of the first confirmed larvae of Hetaeriinae (Coleoptera: Histeridae), Systematic Entomology, vol.16, issue.3, pp.405-418, 2006. ,
DOI : 10.1111/j.1365-3113.2006.00338.x
Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.57, issue.10, pp.2412-2425, 2007. ,
DOI : 10.1099/ijs.0.64865-0
Land plants and DNA barcodes: short-term and long-term goals, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.23, issue.21, pp.1889-1895, 2005. ,
DOI : 10.1093/nar/23.21.4407
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1609218
A proposal for a standardised protocol to barcode all land plants, Taxon, vol.56, pp.295-299, 2007. ,
A quick, direct method that can differentiate expressed mitochondrial genes from their nuclear pseudogenes, Current Biology, vol.6, issue.10, pp.1337-1339, 1996. ,
DOI : 10.1016/S0960-9822(02)70720-3
Biological identifications through DNA barcodes: the case of the Crustacea, Canadian Journal of Fisheries and Aquatic Sciences, vol.64, issue.2, pp.272-295, 2007. ,
DOI : 10.1139/f07-008
Taxonomy: DNA barcodes: recent successes and future prospects, Heredity, vol.95, issue.4, pp.254-255, 2006. ,
DOI : 10.1038/sj.hdy.6800858
DNA-BAR: distinguisher selection for DNA barcoding, Bioinformatics, vol.21, issue.16, pp.3424-3426, 2005. ,
DOI : 10.1093/bioinformatics/bti547
Towards integrative taxonomy, Biological Journal of the Linnean Society, vol.85, issue.3, pp.407-415, 2005. ,
DOI : 10.1111/j.1095-8312.2005.00503.x
Microbial population genomics and ecology: the road ahead, Environmental Microbiology, vol.51, issue.9, 2004. ,
DOI : 10.1126/science.1093857
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior, Science, vol.311, issue.5760, pp.496-503, 2006. ,
DOI : 10.1126/science.1120250
The unholy trinity: taxonomy, species delimitation and DNA barcoding, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.18, issue.1, pp.1905-1916, 2005. ,
DOI : 10.1080/106351502753475880
Species Discovery versus Species Identification in DNA Barcoding Efforts: Response to Rubinoff, Conservation Biology, vol.2, issue.5, pp.1545-1547, 2006. ,
DOI : 10.1146/annurev.ecolsys.35.112202.130128
DNA barcoding is no substitute for taxonomy, Nature, vol.434, issue.7034, pp.697-697, 2005. ,
DOI : 10.1038/434697b
Profile hidden Markov models, Bioinformatics, vol.14, issue.9, pp.755-763, 1998. ,
DOI : 10.1093/bioinformatics/14.9.755
Identification of Internal Transcribed Spacer Sequence Motifs in Truffles: a First Step toward Their DNA Bar Coding, Applied and Environmental Microbiology, vol.73, issue.16, pp.73-5320, 2007. ,
DOI : 10.1128/AEM.00530-07
CO1 phylogenies in diploblasts and the 'Barcoding of Life' - are we sequencing a suboptimal partition?, Molecular Ecology Notes, vol.53, issue.2, pp.550-553, 2006. ,
DOI : 10.1046/j.1365-294X.2002.01652.x
An Assessment of Potential Diatom ???Barcode??? Genes (cox1, rbcL, 18S and ITS rDNA) and their Effectiveness in Determining Relationships in Sellaphora (Bacillariophyta), Protist, vol.158, issue.3, pp.349-364, 2007. ,
DOI : 10.1016/j.protis.2007.04.001
On the use of genetic divergence for identifying species, Biological Journal of the Linnean Society, vol.75, issue.4, pp.509-516, 2002. ,
DOI : 10.1046/j.1095-8312.2002.00042.x
DNA Barcoding: An Instance of Technology-driven Science?, BioScience, vol.56, issue.6, pp.462-463, 2006. ,
DOI : 10.1641/0006-3568(2006)56[462:DBAIOT]2.0.CO;2
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates, Mol. Mar. Biol. Biotech, vol.3, pp.294-299, 1994. ,
Molecular barcodes for soil nematode identification, Molecular Ecology, vol.143, issue.4, pp.839-850, 2002. ,
DOI : 10.1093/nar/25.24.4876
Intraspecific phylogenetic congruence among multiple symbiont genomes, Proceedings of the Royal Society B: Biological Sciences, vol.267, issue.1461, pp.2517-2521, 2000. ,
DOI : 10.1098/rspb.2000.1314
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1690841
Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA, Annual Review of Ecology, Evolution, and Systematics, vol.34, issue.1, pp.397-423, 2003. ,
DOI : 10.1146/annurev.ecolsys.34.011802.132421
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood, Systematic Biology, vol.52, issue.5, pp.696-704, 2003. ,
DOI : 10.1080/10635150390235520
Phylogenetic Species, Nested Hierarchies, and Character Fixation, Cladistics, vol.21, issue.2, pp.364-384, 2000. ,
DOI : 10.1046/j.1365-294x.1998.00308.x
Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon, Proceedings of the Royal Society B: Biological Sciences, vol.20, issue.12, pp.199-207, 2007. ,
DOI : 10.1073/pnas.1132069100
Barcoding generalist predators by polymerase chain reaction: carabids and spiders, Molecular Ecology, vol.17, issue.10, pp.3247-3266, 2005. ,
DOI : 10.1046/j.1365-294x.1999.00823.x
DNA barcoding does not compete with taxonomy, Nature, vol.434, issue.7037, pp.1067-1067, 2005. ,
DOI : 10.1038/4341067b
Universal inheritable barcodes for identifying organisms, Trends in Plant Science, vol.7, issue.12, pp.542-544, 2002. ,
DOI : 10.1016/S1360-1385(02)02364-6
DNA barcodes distinguish species of tropical Lepidoptera, Proceedings of the National Academy of Sciences, vol.103, issue.4, pp.968-971, 2006. ,
DOI : 10.1073/pnas.0510466103
Benchmarking DNA barcodes: an assessment using available primate sequences, Genome, vol.49, issue.7, pp.851-854, 2006. ,
DOI : 10.1139/G06-025
A minimalist barcode can identify a specimen whose DNA is degraded, Molecular Ecology Notes, vol.360, issue.4, pp.959-964, 2006. ,
DOI : 10.1111/j.1471-8286.2006.01470.x
Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring, BMC Biology, vol.5, issue.1, pp.10-1186, 2007. ,
DOI : 10.1186/1741-7007-5-24
DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics, Trends in Genetics, vol.23, issue.4, pp.167-172, 2007. ,
DOI : 10.1016/j.tig.2007.02.001
A new species of Plusia (Lepidoptera: Noctuidae) from North America, The Canadian Entomologist, vol.3, issue.06, pp.853-859, 2006. ,
DOI : 10.4039/n06-041
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species, Proceedings of the Royal Society B: Biological Sciences, vol.270, issue.Suppl_1, pp.96-99, 2003. ,
DOI : 10.1098/rsbl.2003.0025
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator, Proceedings of the National Academy of Sciences, vol.101, issue.41, pp.14812-14817, 2004. ,
DOI : 10.1073/pnas.0406166101
Identification of Birds through DNA Barcodes, PLoS Biology, vol.104, issue.10, pp.1657-1663, 2004. ,
DOI : 10.1371/journal.pbio.0020312.sg001
Reply to the comment by L. Prendini on "Identifying spiders through DNA barcodes", Canadian Journal of Zoology, vol.83, issue.3, pp.505-506, 2005. ,
DOI : 10.1139/z05-026
The Promise of DNA Barcoding for Taxonomy, Systematic Biology, vol.54, issue.5, pp.852-859, 2005. ,
DOI : 10.1080/10635150500354886
DNA Barcoding Will Often Fail to Discover New Animal Species over Broad Parameter Space, Systematic Biology, vol.55, issue.5, pp.729-739, 2006. ,
DOI : 10.1080/10635150600969898
Biological identification of springtails (Hexapoda: Collembola) from the Canadian Arctic, using mitochondrial DNA barcodes, Canadian Journal of Zoology, vol.82, issue.5, pp.749-754, 2004. ,
DOI : 10.1139/z04-041
Identifying earthworms through DNA barcodes, Pedobiologia, vol.51, issue.4, pp.301-309, 2007. ,
DOI : 10.1016/j.pedobi.2007.05.003
Sequencing breakthroughs for genomic ecology and evolutionary biology, Molecular Ecology Resources, vol.181, issue.1, 2007. ,
DOI : 10.1046/j.1365-294X.2003.01743.x
(Lepidoptera: Tortricidae), Molecular Ecology Notes, vol.26, issue.7, pp.549-557, 2007. ,
DOI : 10.1111/j.1471-8286.2007.01786.x
Nondestructive DNA extraction from blackflies (Diptera: Simuliidae): retaining voucher specimens for DNA barcoding projects, Molecular Ecology Resources, vol.87, issue.1, 2007. ,
DOI : 10.2307/2413635
Male-killing Wolbachia in two species of insect, Proceedings of the Royal Society B: Biological Sciences, vol.266, issue.1420, pp.735-740, 1999. ,
DOI : 10.1098/rspb.1999.0698
Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts, Proceedings of the Royal Society B: Biological Sciences, vol.261, issue.1360, pp.1525-1534, 2005. ,
DOI : 10.1098/rspb.1995.0117
Universal primer cocktails for fish DNA barcoding, Molecular Ecology Notes, vol.5, issue.4, pp.544-548, 2007. ,
DOI : 10.1111/j.1471-8286.2007.01748.x
anamorph, Mycologia, vol.98, issue.3, pp.499-513, 2006. ,
DOI : 10.1080/15572536.2006.11832685
Inference of population genetic parameters in metagenomics: A clean look at messy data, Genome Research, vol.16, issue.10, pp.1320-1327, 2006. ,
DOI : 10.1101/gr.5431206
), Molecular Ecology Notes, vol.360, issue.1, pp.177-183, 2007. ,
DOI : 10.1111/j.1471-8286.2006.01641.x
Comprehensive DNA barcode coverage of North American birds, Molecular Ecology Notes, vol.102, issue.4, pp.535-543, 2007. ,
DOI : 10.1111/j.1471-8286.2007.01670.x
The Closest BLAST Hit Is Often Not the Nearest Neighbor, Journal of Molecular Evolution, vol.51, issue.6, pp.540-542, 2001. ,
DOI : 10.1007/s002390010184
Use of DNA barcodes to identify flowering plants, Proceedings of the National Academy of Sciences, vol.102, issue.23, pp.8369-8374, 2005. ,
DOI : 10.1073/pnas.0503123102
A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region, PLoS ONE, vol.141, issue.12, p.508, 2007. ,
DOI : 10.1371/journal.pone.0000508.s003
DNA Barcodes Can Distinguish Species of Indian Mosquitoes (Diptera: Culicidae), Journal of Medical Entomology, vol.44, issue.1, pp.1-7, 2007. ,
DOI : 10.1093/jmedent/41.5.01
DNA barcoding the floras of biodiversity hotspots, Proceedings of the National Academy of Sciences, vol.105, issue.8, pp.2923-2928, 2008. ,
DOI : 10.1073/pnas.0709936105
A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding, Molecular Phylogenetics and Evolution, vol.44, issue.2, pp.634-648, 2007. ,
DOI : 10.1016/j.ympev.2007.03.016
VectorBase: a home for invertebrate vectors of human pathogens, Nucleic Acids Research, vol.35, issue.Database, pp.503-505, 2007. ,
DOI : 10.1093/nar/gkl960
Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation, Molecular Phylogenetics and Evolution, vol.40, issue.2, pp.435-447, 2006. ,
DOI : 10.1016/j.ympev.2006.03.014
URL : https://hal.archives-ouvertes.fr/halsde-00157646
Intestinal metagenomics and nutrition, Annals Nutri. Metabol, vol.51, issue.1313, 2007. ,
The intellectual content of taxonomy: a comment on DNA taxonomy, Trends in Ecology & Evolution, vol.18, issue.2, pp.65-66, 2003. ,
DOI : 10.1016/S0169-5347(02)00060-5
RECOGNIZING DINOFLAGELLATE SPECIES USING ITS rDNA SEQUENCES, Journal of Phycology, vol.43, issue.2, pp.344-355, 2007. ,
DOI : 10.1111/j.1529-8817.2007.00320.x
A comparison of algorithms for the identification of specimens using DNA barcodes: examples from gymnosperms, Cladistics, vol.2, issue.1, pp.1-21, 2007. ,
DOI : 10.1089/10665270050081478
The problems and promise of DNA barcodes for species diagnosis of primate biomaterials, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.43, issue.5, pp.1869-1877, 2005. ,
DOI : 10.1006/mpev.2000.0833
Species of Tetrahymena Identical by Small Subunit rRNA Gene Sequences are Discriminated by Mitochondrial Cytochrome c Oxidase I Gene Sequences, The Journal of Eukaryotic Microbiology, vol.10, issue.5, pp.385-387, 2006. ,
DOI : 10.1371/journal.pbio.0030422
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms, Proceedings of the National Academy of Sciences, vol.95, issue.6, pp.95-3140, 1996. ,
DOI : 10.1073/pnas.95.6.3140
A likelihood ratio test for species membership based on DNA sequence data, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.22, issue.2, pp.1969-1974, 2005. ,
DOI : 10.1186/1742-9994-2-5
DNA Barcoding: Error Rates Based on Comprehensive Sampling, PLoS Biology, vol.85, issue.12, pp.2229-2238, 2005. ,
DOI : 10.1371/journal.pbio.0030422.st003
URL : http://doi.org/10.1371/journal.pbio.0030422
DNA barcoding and the renaissance of taxonomy, Proceedings of the National Academy of Sciences, vol.104, issue.12, pp.4775-4776, 2007. ,
DOI : 10.1073/pnas.0700466104
BARCODING: Assessing the effect of varying sequence length on DNA barcoding of fungi, Molecular Ecology Notes, vol.360, issue.Web Server issu, pp.365-373, 2007. ,
DOI : 10.1111/j.1471-8286.2007.01698.x
DNA barcoding as a tool for coral reef conservation, Coral Reefs, vol.84, issue.2, pp.487-499, 2007. ,
DOI : 10.1007/s00338-007-0248-4
Statistical Approaches for DNA Barcoding, Systematic Biology, vol.55, issue.1, pp.162-169, 2006. ,
DOI : 10.1080/10635150500431239
The taxonomic feedback loop: symbiosis of morphology and molecules, Biology Letters, vol.1, issue.2, pp.139-142, 2005. ,
DOI : 10.1098/rsbl.2005.0298
The power and perils of ???molecular taxonomy???: a case study of eyeless and endangered Cicurina (Araneae: Dictynidae) from Texas caves, Molecular Ecology, vol.20, issue.10, pp.3239-3255, 2004. ,
DOI : 10.1111/j.1365-294X.2004.02296.x
DNA as a Dietary Biomarker in Antarctic Krill, Euphausia superba, Marine Biotechnology, vol.8, issue.6, pp.686-696, 2006. ,
DOI : 10.1007/s10126-005-6088-8
TAXONOMY: Wanted: A Barcode for Plants, Science, vol.318, issue.5848, pp.190-191, 2007. ,
DOI : 10.1126/science.318.5848.190
MtDNA barcode identification of fish larvae in the southern Great Barrier Reef ??? Australia, Scientia Marina, vol.70, issue.S2, pp.7-12, 2006. ,
DOI : 10.3989/scimar.2006.70s27
NUMTs in Sequenced Eukaryotic Genomes, Molecular Biology and Evolution, vol.21, issue.6, pp.1081-1084, 2004. ,
DOI : 10.1093/molbev/msh110
Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta), American Journal of Botany, vol.93, issue.8, pp.1101-1108, 2006. ,
DOI : 10.3732/ajb.93.8.1101
Testing the Reliability of Genetic Methods of Species Identification via Simulation, Systematic Biology, vol.57, issue.2, pp.216-230, 2008. ,
DOI : 10.1080/10635150802032990
Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria, BMC Evol. Biol, vol.6, issue.71, 2006. ,
Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods, Molecular Ecology Notes, vol.26, issue.6, pp.915-924, 2007. ,
DOI : 10.1006/mpev.1994.1029
Between Two Extremes: Mitochondrial DNA is neither the Panacea nor the Nemesis of Phylogenetic and Taxonomic Inference, Systematic Biology, vol.54, issue.6, pp.92-961, 2005. ,
DOI : 10.1080/10635150500234674
Essays: Utility of Mitochondrial DNA Barcodes in Species Conservation, Conservation Biology, vol.20, issue.Su, pp.1026-1033, 2006. ,
DOI : 10.1111/j.1523-1739.2006.00372.x
DNA Barcoding Evolves into the Familiar, Conservation Biology, vol.20, issue.5, pp.1548-1549, 2006. ,
DOI : 10.1080/10635150500354878
Are plant DNA barcodes a search for the Holy Grail?, Trends in Ecology & Evolution, vol.21, issue.1, pp.1-2, 2006. ,
DOI : 10.1016/j.tree.2005.10.019
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific, PLoS Biology, vol.445, issue.3, pp.398-431, 2007. ,
DOI : 10.1371/journal.pbio.0050077.sd001
An automated phylogenetic key for classifying homeoboxes, Molecular Phylogenetics and Evolution, vol.24, issue.3, pp.388-399, 2002. ,
DOI : 10.1016/S1055-7903(02)00259-2
Characteristic attributes in cancer microarrays, Journal of Biomedical Informatics, vol.35, issue.2, pp.111-122, 2002. ,
DOI : 10.1016/S1532-0464(02)00504-X
Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.37, issue.1, pp.1879-1888, 2005. ,
DOI : 10.1046/j.1529-8817.2001.037001184.x
DNA barcoding a useful tool for taxonomists, Nature, vol.434, issue.7038, pp.17-17, 2005. ,
DOI : 10.1038/435017b
DengueInfo: A web portal to dengue information resources, Infection, Genetics and Evolution, vol.7, issue.4, pp.540-541, 2007. ,
DOI : 10.1016/j.meegid.2007.02.002
Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case, Proceedings of the National Academy of Sciences, vol.104, issue.10, pp.3901-3906, 2007. ,
DOI : 10.1073/pnas.0611691104
Primers and polymerase chain reaction conditions for DNA barcoding teleost fish based on the mitochondrial cytochrome b and nuclear rhodopsin genes, Molecular Ecology Notes, vol.13, issue.5, pp.730-734, 2007. ,
DOI : 10.1007/PL00006545
Impact of DNA sequence-data on the taxonomy of anamorphic fungi, Fungal Div, vol.26, pp.1-54, 2007. ,
DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.18, issue.3, pp.1825-1834, 2005. ,
DOI : 10.1126/science.267.5199.852
Taxonomy and barcoding: conflict or companions? S. Af, J. Sci, vol.102, pp.517-518, 2006. ,
DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae), Proceedings of the National Academy of Sciences, vol.103, issue.10, pp.3657-3662, 2006. ,
DOI : 10.1073/pnas.0511318103
DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists, Proceedings of the National Academy of Sciences, vol.104, issue.12, pp.4967-4972, 2007. ,
DOI : 10.1073/pnas.0700050104
Microbial diversity in the deep sea and the underexplored "rare biosphere", Proc. Natl. Acad. Sci. U.S.A. 103, pp.12115-12120, 2006. ,
DOI : 10.1073/pnas.0605127103
A barcode of life database for the Cephalopoda? Considerations and concerns, Reviews in Fish Biology and Fisheries, vol.387, issue.11, pp.337-344, 2007. ,
DOI : 10.1007/s11160-007-9043-0
Identification of trichosporon asahii by PCR based on sequences of the internal transcribed spacer regions, J. of clinical microbiol, pp.2742-2744, 1998. ,
Microcoding: the second step in DNA barcoding, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.41, issue.1, pp.1897-1903, 2005. ,
DOI : 10.1128/JCM.41.1.359-367.2003
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding, Nucleic Acids Research, vol.35, issue.3, p.14, 2007. ,
DOI : 10.1093/nar/gkl938
URL : https://hal.archives-ouvertes.fr/halsde-00276494
Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds, BMC Evolutionary Biology, vol.8, issue.1, p.81, 2008. ,
DOI : 10.1186/1471-2148-8-81
A mitochondrial phylogeography of Brachidontes variabilis (Bivalvia: Mytilidae) reveals three cryptic species, Journal of Zoological Systematics and Evolutionary Research, vol.28, issue.4, pp.289-298, 2007. ,
DOI : 10.1073/pnas.91.16.7463
Molecular identification of vertebrate species by oligonucleotide microarray in food and forensic samples, Journal of Applied Ecology, vol.298, issue.3, 2008. ,
DOI : 10.1111/j.1365-2664.2007.01415.x
Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes, Molecular Ecology, vol.76, issue.2, pp.321-335, 2004. ,
DOI : 10.1046/j.1365-294X.2003.02070.x
PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens, BMC Bioinform, 1471. ,
Comparative Metagenomics of Microbial Communities, Science, vol.308, issue.5721, pp.554-557, 2005. ,
DOI : 10.1126/science.1107851
Community structure and metabolism through reconstruction of microbial genomes from the environment, Nature, vol.428, issue.6978, pp.37-43, 2004. ,
DOI : 10.1038/nature02340
Performance of 16S rRNA in DNA barcoding of amphibians, Integr. Comp. Biol, vol.44, pp.657-657, 2004. ,
Deciphering amphibian diversity through DNA barcoding: chances and challenges, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.22, issue.4, pp.1859-1868, 2005. ,
DOI : 10.1146/annurev.es.11.110180.000435
Environmental Genome Shotgun Sequencing of the Sargasso Sea, Science, vol.304, issue.5667, pp.66-74, 2004. ,
DOI : 10.1126/science.1093857
Recent advances in DNA taxonomy, Journal of Zoological Systematics and Evolutionary Research, vol.213, issue.1, pp.1-10, 2007. ,
DOI : 10.1016/S0169-5347(02)00040-X
DNA barcoding Australia's fish species, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.11, issue.6897, pp.1847-1857, 2005. ,
DOI : 10.1093/molbev/msg133
DNA barcoding: A molecular tool to identify Antarctic marine larvae. Deep-Sea Res, pp.1053-1060, 2006. ,
From Parasite to Mutualist: Rapid Evolution of Wolbachia in Natural Populations of Drosophila, PLoS Biology, vol.22, issue.5, p.114, 2007. ,
DOI : 10.1371/journal.pbio.0050114.st001
DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae), Proceedings of the Royal Society B: Biological Sciences, vol.265, issue.1395, pp.1731-1739, 2007. ,
DOI : 10.1080/10635150500354878
URL : https://hal.archives-ouvertes.fr/hal-00941689
Does the DNA barcoding gap exist? ??? a case study in blue butterflies (Lepidoptera: Lycaenidae), Frontiers in Zoology, vol.4, issue.1, pp.1742-9994, 2007. ,
DOI : 10.1186/1742-9994-4-8
PHI-base: a new database for pathogen host interactions, Nucleic Acids Research, vol.34, issue.90001, pp.459-464, 2006. ,
DOI : 10.1093/nar/gkj047
Mitochondrial Pseudogenes Are Pervasive and Often Insidious in the Snapping Shrimp Genus Alpheus, Molecular Biology and Evolution, vol.18, issue.8, pp.1484-1493, 2001. ,
DOI : 10.1093/oxfordjournals.molbev.a003934
The encyclopedia of life, Trends in Ecology & Evolution, vol.18, issue.2, pp.77-80, 2004. ,
DOI : 10.1016/S0169-5347(02)00040-X
Directional substitution and evolution of nucleotide content in the cytochrome oxidase II gene in earwigs (dermapteran insects) Citation], Molecular Biology and Evolution, vol.16, issue.12, pp.1645-1653, 1999. ,
DOI : 10.1093/oxfordjournals.molbev.a026078
Sex and virulence in Escherichia coli: an evolutionary perspective, Molecular Microbiology, vol.179, issue.5, pp.1136-1151, 2006. ,
DOI : 10.1111/j.1365-2958.2005.04985.x
URL : https://hal.archives-ouvertes.fr/hal-00174910
Phylogenetic trees: whither microbiology? Current biol, pp.1060-1063, 1996. ,
DOI : 10.1016/s0960-9822(02)70664-7
URL : http://doi.org/10.1016/s0960-9822(02)70664-7
Determination of haplotypes from single DNA molecules: a method for single-molecule barcoding, Human Mutation, vol.300, issue.58, pp.913-921, 2007. ,
DOI : 10.1002/humu.20528
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiol, pp.3913-3919, 1997. ,